Named Entity Recognition (NER) model to recognize organism entities.

PubMedBERT fine-tuned on the following datasets:

• CellFinder: entity type "species"
• CRAFT: entity type "NCBITaxon"
• MLEE:entity type "organism"
• LINNAEUS (train and dev sets):
• Species-800
• BioNLP11ID: entity type "Organism"
• BioNLP13CG: entity types "Organism", "Organism subdivision"
• miRNA-Test-Corpus: entity type "species"
• Mantra:entity type "DISO"