short-pubmed-bertopic
This is a BERTopic model. BERTopic is a flexible and modular topic modeling framework that allows for the generation of easily interpretable topics from large datasets.
Usage
To use this model, please install BERTopic:
pip install -U bertopic
You can use the model as follows:
from bertopic import BERTopic
topic_model = BERTopic.load("etanios/short-pubmed-bertopic")
topic_model.get_topic_info()
Topic overview
- Number of topics: 32
- Number of training documents: 9999
<details> <summary>Click here for an overview of all topics.</summary>
| Topic ID | Topic Keywords | Topic Frequency | Label |
|---|---|---|---|
| -1 | patients - activity - cells - acid - 10 | 53 | Medical research studies |
| 0 | health - children - care - medical - patient | 3897 | Healthcare and Mental Health |
| 1 | renal - pressure - renin - blood - sodium | 702 | Renal physiology and hypertension |
| 2 | progesterone - pregnancy - lh - testosterone - fetal | 516 | Reproductive physiology and endocrinology |
| 3 | ventricular - coronary - left - patients - myocardial | 404 | Cardiac physiology and anatomy |
| 4 | method - gas - liquid - chromatography - urine | 381 | Analytical techniques for chemical analysis |
| 5 | morphine - mg kg - kg - brain - mg | 296 | Effects of drugs on rat behavior |
| 6 | cells - tumor - mice - cell - lymphocytes | 281 | Tumor immunology and lymphocyte activation |
| 7 | hip - patients - joint - rheumatoid - knee | 278 | Hip and Knee Fractures in Rheumatoid Arthritis Patients |
| 8 | cells - electron - cell - axons - synaptic | 265 | Neuroanatomy and Synaptic Structures |
| 9 | retinal - eyes - vitreous - eye - cases | 237 | Ocular Surgery |
| 10 | patients - ulcer - cases - disease - crohn | 203 | Gastrointestinal surgery and complications |
| 11 | strains - resistant - antibiotic - gentamicin - antibiotics | 201 | Antibiotic resistance in bacterial strains |
| 12 | enzyme - molecular - acid - activity - phosphate | 201 | Enzymology and Molecular Biology |
| 13 | iron - hemoglobin - hb - erythrocytes - deficiency | 178 | Iron Deficiency Anemia Research |
| 14 | infection - virus - infected - vaccinated - cattle | 175 | Virus infection and vaccination studies |
| 15 | platelet - platelets - aggregation - fibrinogen - coagulation | 167 | Platelet function and coagulation |
| 16 | cancer - carcinoma - patients - tumor - cases | 158 | Cancer treatment and survival rates |
| 17 | lung - volume - oxygen - flow - ventilation | 152 | Pulmonary Function and Exercise |
| 18 | calcium - thyroid - t3 - parathyroid - t4 | 151 | Thyroid and Parathyroid Hormones |
| 19 | fatty - cholesterol - acid - liver - acids | 144 | Lipid metabolism in rats |
| 20 | diet - weight - egg - diets - fed | 117 | Poultry Nutrition and Physiology |
| 21 | stimulation - nerve - neurons - units - motor | 111 | Motor Neuron Discharge and Potentials |
| 22 | glucose - insulin - glucagon - levels - blood glucose | 102 | Insulin and glucose metabolism |
| 23 | hearing - ear - cochlear - auditory - noise | 99 | Hearing and Auditory Function |
| 24 | rna - dna - chromatin - proteins - polymerase | 95 | |
| 25 | carotid - artery - intracranial - aneurysms - subdural | 94 | Carotid Artery Aneurysms and Intracranial Hemorrhage |
| 26 | bone - mineral - fluoride - enamel - mineralization | 81 | Bone and Mineral Metabolism |
| 27 | temperature - degrees - heat - temperatures - cold | 75 | Effects of Temperature on Human Physiology |
| 28 | bile - acid - biliary - cholesterol - bile acid | 63 | Biliary Lipid Metabolism |
| 29 | visual - light - receptive - sensitivity - dark | 61 | Visual processing and sensitivity |
| 30 | lung - pulmonary - chest - pleural - patients | 61 | Respiratory system diseases and disorders |
</details>
Training hyperparameters
- calculate_probabilities: False
- language: None
- low_memory: False
- min_topic_size: 10
- n_gram_range: (1, 1)
- nr_topics: None
- seed_topic_list: None
- top_n_words: 10
- verbose: True
Framework versions
- Numpy: 1.23.5
- HDBSCAN: 0.8.33
- UMAP: 0.5.4
- Pandas: 1.5.3
- Scikit-Learn: 1.2.2
- Sentence-transformers: 2.2.2
- Transformers: 4.33.2
- Numba: 0.56.4
- Plotly: 5.15.0
- Python: 3.10.12
