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Bio_ClinicalBERT_fold_5_binary_v1
This model is a fine-tuned version of emilyalsentzer/Bio_ClinicalBERT on the None dataset. It achieves the following results on the evaluation set:
- Loss: 1.6689
- F1: 0.8148
Model description
More information needed
Intended uses & limitations
More information needed
Training and evaluation data
More information needed
Training procedure
Training hyperparameters
The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 16
- eval_batch_size: 16
- seed: 42
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: linear
- num_epochs: 25
Training results
| Training Loss | Epoch | Step | Validation Loss | F1 |
|---|---|---|---|---|
| No log | 1.0 | 288 | 0.4406 | 0.8072 |
| 0.4043 | 2.0 | 576 | 0.4952 | 0.8059 |
| 0.4043 | 3.0 | 864 | 0.4988 | 0.8222 |
| 0.2025 | 4.0 | 1152 | 0.8866 | 0.7948 |
| 0.2025 | 5.0 | 1440 | 0.9027 | 0.8176 |
| 0.0865 | 6.0 | 1728 | 1.1263 | 0.8003 |
| 0.035 | 7.0 | 2016 | 1.2498 | 0.7998 |
| 0.035 | 8.0 | 2304 | 1.3188 | 0.8093 |
| 0.0133 | 9.0 | 2592 | 1.4641 | 0.8021 |
| 0.0133 | 10.0 | 2880 | 1.4972 | 0.8042 |
| 0.0119 | 11.0 | 3168 | 1.5511 | 0.8057 |
| 0.0119 | 12.0 | 3456 | 1.5184 | 0.8108 |
| 0.0131 | 13.0 | 3744 | 1.5716 | 0.8017 |
| 0.0067 | 14.0 | 4032 | 1.5305 | 0.8176 |
| 0.0067 | 15.0 | 4320 | 1.4945 | 0.8227 |
| 0.0113 | 16.0 | 4608 | 1.5241 | 0.8216 |
| 0.0113 | 17.0 | 4896 | 1.5571 | 0.8182 |
| 0.0072 | 18.0 | 5184 | 1.6044 | 0.8107 |
| 0.0072 | 19.0 | 5472 | 1.6129 | 0.8156 |
| 0.002 | 20.0 | 5760 | 1.6990 | 0.8126 |
| 0.0036 | 21.0 | 6048 | 1.6867 | 0.8109 |
| 0.0036 | 22.0 | 6336 | 1.7301 | 0.8100 |
| 0.0021 | 23.0 | 6624 | 1.6595 | 0.8167 |
| 0.0021 | 24.0 | 6912 | 1.6577 | 0.8132 |
| 0.0029 | 25.0 | 7200 | 1.6689 | 0.8148 |
Framework versions
- Transformers 4.21.0
- Pytorch 1.12.0+cu113
- Datasets 2.4.0
- Tokenizers 0.12.1
