Named Entity Recognition (NER) model to recognize disease entities.

PubMedBERT fine-tuned on the following datasets:

• NCBI Disease Corpus (train and dev sets)
• PHAEDRA (train, dev, test sets): entity type "Disorder"
• Corpus for Disease Names and Adverse Effects (train, dev, test sets): entity types "DISEASE", "ADVERSE"
• RareDis corpus (train, dev, test sets): entity types "DISEASE", "RAREDISEASE", "SYMPTOM"
• CoMAGC (train, dev, test sets): entity type "cancer_term"
• PGxCorpus (train, dev, test sets):
• miRNA-Test-Corpus (train, dev, test sets): entity type "Diseases"
• BC5CDR (train and dev sets): entity type "Disease"
• Mantra (train, dev, test sets): entity type "DISO"