Named Entity Recognition (NER) model to recognize anatomical entities.
PubMedBERT fine-tuned on the following datasets:
- MANTRA: entity type "ANAT"
- CellFinder: entity type "Anatomical parts"
- CRAFT: entity type "UBERON"
- MLEE: entity types "Anatomical_system", "Organ", "Multi-tissue structure", "Tissue", "Immaterial_anatomical_entity"
- AnatEM
- BioNLP13CG: entity types "Multi-tissue structure", "Tissue", "Organ", "Immaterial anatomical entity", "Anatomical system"
- GREC: entity type "Tissue"